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Species belonging to selected taxon:

Drosophila simulans



ABOUT THIS RECORD

ID: MNEST037212
species: Drosophila simulans
miRNA family: mir-31
source: miRBase, original name: dsi-mir-31a (MI0009453)

Taxonomy by NCBI:
Drosophila simulans melanogaster subgroup melanogaster group Sophophora Drosophila Drosophiliti Drosophilina Drosophilini Drosophilinae Drosophilidae Ephydroidea Acalyptratae Schizophora Cyclorrhapha Eremoneura Muscomorpha Brachycera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGGCAAGATGTCGGCATAGCTGA

miRNA*
CGCTATGCTGCATCTAGTCAGT

mismatches: 4
bulges: 1

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pre-miRNA
TCCGTTGGTAAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGATTTTGAAGAGCGCTATGCTGCATCTAGTCAGTTGTTCAATGGA

dot-bracket secondary structure
((((((((..(((((((.(((((.(((((((((...((((....))))..((....))..)))))))))))))).)))))))..))))))))


SIMILARITIES
miRBase dme-mir-31a: 3e-47

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-31: 1e-43

Identical with: dse-mir-31a from miRBase (MNEST037136)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie, Nature. 450:203-218(2007)., "Evolution of genes and genomes on the Drosophila phylogeny"




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